fix for issue number 1420546 - only allow view modes for file and colorbox view modes that are not using media_colorbox formatter

fix for inline media and javascript, the media input filter is cached so js added in theme will not be output when using cached version. Moved JavaScript to .info file to load always and moved settings to data attributes that will be cached with output

Issue #1296186 by jide, 1291618 by oxyc, and changed and enhancements by kmadel: Changes include support for all entity types, entity based fields as colorbox caption.