Issue #2571235 by alexpott, claudiu.cristea, dawehner, Wim Leers, gabesullice, IJsbrandy, benjifisher, alisonjo315, larowlan, Berdir, effulgentsia, longwave, herom, dmouse, heddn, catch: [regression] Roles should depend on objects that are building the granted permissions

Issue #2886622 by Berdir, martin107, Mile23, tim.plunkett, mikelutz, jonathan1055: Deprecate all EntityManager methods with E_USER_DEPRECATED

Issue #2308745 by Alumei, dawehner, Wim Leers, larowlan, Arla, alexpott, g.oechsler, R.Muilwijk, Berdir, catch, klausi, clemens.tolboom, MattA, Crell: Remove rest.settings.yml, use rest_resource config entities

Issue #2579235 by kylebrowning, willzyx: Resource plugin manager needlessly calls wrong method to instantiate plugins

Issue #2665992 by alexpott, klausi, heykarthikwithu, xjm, tstoeckler: @file is not required for classes, interfaces and traits

Issue #2328411 by dawehner, geerlingguy, herom: Convert all permissions to yml files and permission callbacks.