Issue #1008256, #224333#registry: The files listed in an info file should only include those that declare a class (or interface).

coder_upgrade.module: #1010762 by Placinta: fix inconsistent return value in coder_upgrade_conversions_apply().

various files: replace calls to pgp_log_memory_use() with coder_upgrade_memory_print(); coder_upgrade.module: #982380: correct coder_upgrade_parameters_save() to use module directory instead of files directory, enhance coder_upgrade_conversions_apply() to capture errors and return code; coder_upgrade.main.inc: refactor print routines to use coder_upgrade_path_print(); coder_upgrade.run.php: enhance documentation; coder_upgrade.test: refactor getInfo() routines; tests/samples directory: update the input and expected test file: example.module.

coder_upgrade.main.inc: #245471 (comment #7): remove base directory path from patch file in coder_upgrade_make_patch_file(); inc, install, help.inc, main.inc, module, test: refactor file_directory_path() references to coder_upgrade_directory_path(); coder_upgrade.run.php: add php memory and time limits.

coder_upgrade.inc, coder_upgrade.install, coder_upgrade.module, coder_upgrade.main.inc: refactor code to allow execution from a separate process outside of Drupal; coder_upgrade.begin.inc: cache the core theme information in the persistent cache (includes disabled modules).

coder_upgrade.db.inc: enhance error handling by checking for conditions not being found in a select query; coder_upgrade.call.inc, coder_upgrade.function.inc: enhance #theme_changes to check number of parameters to theme_xxx() and hook_theme entry; coder_upgrade.function.inc: enhance #theme_changes when setting theme key to 'render element' also change value from an associative array to a string.

coder_upgrade.install: hook_uninstall(): delete recently added settings variables, hook_requirements(): use get_t().

coder_upgrade.function.inc: refactor #hook_permission to hook_upgrade_hook_perm_alter(), refactor #descriptions_permissions to use the convert_return() pattern (use cases 1 and 2), refactor doc_comment checking in coder_upgrade_convert_update_N() to revert to that in hook_upgrade_hook_alter(); tests/samples directory: update the input and expected test file: example.module.

coder_upgrade.inc: define file_directory_path() in response to its removal from core; coder_upgrade.db.inc, coder_upgrade.function.inc: coding style fixes.

coder_upgrade.function.inc: enhance #hook_filter_info (including a missed parser API change that broke the entire routine), #install-schema, #hook-user-changes, #hook_load_signature, and #theme_changes.

coder_upgrade.module: improve the menu integration when only Coder Upgrade is enabled, only allow the base files directory to be renamed, enable the submit handler for the settings form; coder_upgrade.main.inc: refactor the coder_upgrade_xxx_path() routines to reflect the coder_upgrade_dir variable.

coder_upgrade.db.inc: enhance coder_upgrade_insert_dbtng_statement() to properly insert statements; coder_upgrade.function.inc: enhance coder_upgrade_op_to_hook() to not use clone and to allow for more than one case statement with no body; tests/samples directory: update the input and expected test file: example.module.

coder_upgrade.call.inc:#878470: enhance #drupal_set_header_renamed to handle no parameters; coder_upgrade.function.inc: enhance #hook_load_signature to clean the parameter variable; coder_upgrade.list.inc: add routine entry for grammar parser; coder_upgrade.main.inc, coder_upgrade.module: implement settings for preserving array format and debug output by coder upgrade and grammar parser.

coder_upgrade.db.inc: improve sql parsing and conversion to DBTNG syntax; coder_upgrade.begin.inc: refactor call to coder_upgrade_convert_return() and associated callback; coder_upgrade.function.inc: enhance coder_upgrade_convert_op() to use new getParameterVariable() API function, refactor the convert return pattern of routines: coder_upgrade_convert_return(), coder_upgrade_convert_return_loop(), and coder_upgrade_callback_return_caseN(); tests/samples directory: update the input and expected test file: example.module.

coder_upgrade.api.php: update documentation to reflect the node being returned by getFunctionCalls(); coder_upgrade.db.inc: improve sql parsing and conversion to DBTNG syntax.

coder_upgrade.call.inc, coder_upgrade.main.inc: revise code to reflect change to PGPReader::getFunctionCalls() which now returns a list of nodes; coder_upgrade.call.inc: enhance #comment_node_url, #taxonomy_form_all, and #update_sql to utilize the node now returned by getFunctionCalls().

coder_upgrade.call.inc: #update_sql, #847914: drupal_get_form() upgrade routine fails when form callback has no parameters; coder_upgrade.function.inc; #837258: add T_ELSE_IF to condition check in coder_upgrade_convert_op(), #update_sql: changes to hook_update_N().

coder_upgrade.test: include function.inc needed by begin.inc; tests/samples directory: update the input and expected test file: example.module (in previous commit).

coder_upgrade.db.inc: improve sql parsing and conversion to DBTNG syntax (by duellj and adrian); coder_upgrade.call.inc: improve #drupal_set_title to only find calls to check_plain(), improve #user_load_multiple to handle inline comments in parameters; coder_upgrade.function.inc: #833972: conform doc_comment to Drupal standards for inserted hook_op functions, add a doc_comment to each function missing one.

coder_upgrade.call.inc: #db_is_active, #remove-drupal-urlencode, improve #user_load_multiple to not always change call to user_load_multiple().

coder_upgrade.call.inc: #taxonomy_form_all; coder_upgrade.function.inc: #node_form, #drupal_render_children; coder_upgrade.regex.inc: #block_tables_renamed, #fapi_changes.

coder_upgrade.main.inc: enhance cdp() to allow for a description; coder_upgrade.regex.inc: implement #taxonomy_tables; tests/samples directory: update the input and expected test file: example.module.

coder_upgrade.module: enable customization of the module conversion form steps (build, validate and submit); coder_upgrade.main.inc: include function reference in patch file (diff -up)

coder.module, coder_review.module, coder_upgrade.module: #776996, #824268: eliminate strict warning in coder_review_page(), #636608: move settings menu items to local task of Review, #824320: eliminate warnings when only one of the Review or Upgrade modules is enabled; coder_upgrade.test: #820140: undefined DEADWOOD_OLD

coder_upgrade.call.inc: Implement #db_column_exists, improve #file_set_status; coder_upgrade.regex.inc: Implement #watchdog_emerg.